ProQuest Subject Index - Biochemistry at UNIVERSITY OF CALIFORNIA SAN DIEGO

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You are viewing titles for UNIVERSITY OF CALIFORNIA SAN DIEGO in the Biochemistry available through the UMI Dissertations & Thesis Gradwoorks site

Microscopic studies in nascent frustule formation from protoplasts of the marine pennate apochlorotic diatom Nitzschia alba and production of novel transformation vectors for studies in N. alba and the marine centric photoautotrophic diatom Thalassiosira pseudonana	Comparison between rabbit and bovine skeletal muscle PFK-1 inhibition in relation to the conditions for muscle glycogen synthesis

Investigation of substrate phosphorylation by and subcellular localization of SR protein kinase 1	Characterization of the RRM2 domain of splicing factor ASF/SF2

Maturation of single retinogeniculate projections visualized by in vivo electroporation of fluorescent proteins	Ultraviolet resonance Raman spectroscopy of the integral membrane protein OmpA: Elucidating structure and tryptophan microenvironment of folded and unfolded states

The Psuedomonas syringae type III effector HopE1 interacts and inhibits an Arabidopsis WNK kinase	Mass spectrometric and bioinformatics approaches to characterizing of cyclic non-ribosomal peptides and ribosomally encoded peptide antibiotic

Genesis of the 1918 H1N1 Spanish influenza into the 2009 swine origin influenza	Enzyme replacement therapy for Pompe disease

The calcification of Staphylococcus aureus bacteria: A potential defense mechanism against infections	The importance of histidine 197 in Escherichia coli release factor 1 and the nucleotide dependence of release factor 3

Characterization of the Archaebacterial Ortholog of the Processing Body Subunit Winnebago/Growl	Evaluating cell-free expression of human integral membrane proteins for structural studies by NMR spectroscopy

The Response of Fatty Acids and Pigments to Variations in Temperature and Irradiance in the Marine Diatom Thalassiosira pseudonana	Probing the Nonribosomal Peptide Synthetase Epimerization Domain via Rationally Designed Suicide Inhibitors

Rapid Detection of Thrombin and Other Protease Activity Directly in Whole Blood	An efficient algorithm combining cell multipole and multigrid methods for rapid evaluation of dipole iteration in polarizable force fields

Biophysical characterization of NEMO and IKK2	Kinetics and mechanism of the interaction of the C1 domain of protein kinase C with lipid membranes

Energy landscapes for protein folding, binding, and aggregation: Simple funnels and beyond	Biochemical and biophysical characterization of the manganese transport regulator (MntR) from Bacillus subtilis

Functional analysis of the ubiquitin ligase Hrd1p with the ubiquitin-conjugating enzyme Ubc7p	Biochemical characterization of matrix Gla protein

Heterocyclic metal-binding groups for matrix metalloproteinase and anthrax lethal factor inhibition	Conformational dynamics of interleukin-1beta and protein-membrane interactions

Aminoglycoside derivatives and mimetics as RNA binders	Characterization of IDI2, a second isopentenyl diphosphate in mammals

Applications of nuclear magnetic resonance spectroscopy to membrane protein structure determination	Characterization of mRNA splicing factors: ASF/SF2 and Ire1p

Inferring interactions and functions of proteins using evolutionary information	X-ray crystallographic and biochemical studies on the bone morphogenetic protein family

Targeting unique nucleic acid structures with small molecules	Investigation of the potential anticancer and antifungal active secondary metabolites from marine natural products

Bioinorganic tools and zinc selective inhibitors for matrix metalloproteinases	Mechanistic characterization of Csk: The role of structural transitions and inter-domain crosstalk in enzyme function

Protein-protein interactions of the LRP1 cytoplasmic domain modulated by tyrosine phosphorylation	Application of nuclear magnetic resonance spectroscopy to the structure determination of the integral membrane proteins of the Mer operon

Discovery and description of a novel toxin within the pan-genome of the waterborne pathogen Vibrio cholerae	NF-kappaB RelB/p52 heterodimer: Biogenesis and DNA recognition

Co-opting CoA biosynthesis for the in vivo modification of carrier proteins	The function, activation and inhibition of phosphatidic acid phosphohydrolase-1 and Group IVA phospholipase A2 in toll-like receptor-4 activated macrophages

Recognition of effectors by the bacterial type III secretion system	Topology, frustration, folding and function of the inflammatory cytokine interleukin-1beta

Thermodynamics and the role of allostery in the thrombin-thrombomodulin interaction	Structural investigation and allosteric properties of a unique disulfide bond in C-terminal Src kinase

Dissecting centromeric DNA-microtubule interactions in vitro uncovers a mechanism that ensures proper connection of chromosomes to the mitotic spindle	Structures of PKA RII beta holoenzymes define isoform diversity

TBP recruitment to the U1 snRNA gene promoter is disrupted by substituting a U6 proximal sequence element A (PSEA) for the U1 PSEA	Lipidomic analysis of eicosanoid dynamics in inflammation and disease

On the rough folding landscape of green fluorescent protein	Deuterium exchange mass spectrometry studies of the phospholipase A2 superfamily

Bottom up approach for the reconstitution and characterization of DNA replication checkpoint	Reversible phosphorylation in mitochondria

The mechanics of SR protein phosphorylation by the splicing kinases SRPK1 and Clk/Sty	Chemoenzymatic investigations of protein-protein interactions in carrier protein-mediated biosynthesis

The folding energy landscape of cytochrome c: Theoretical and experimental investigations	Mechanism, function and modulation of oncogenic Cripto signaling

P105 and p100 proteins function as the core of heterogeneous NF-kappaB complexes	Development of a large format direct detection device for three dimensional transmission electron microscopy

Computational and pharmacological modeling of membrane proteins	Amplified detection of protease activity using porous silicon nanostructures

G proteins and their regulators in EGF receptor trafficking and mitochondrial functions	Structure-function relationships in enzymes of the nucleotidyltransferase superfamily: RNA ligation and mRNA capping

A NF-kappaB temporal code to ensure specificity in inflammatory signaling	Dissecting the allosteric regulation of PKA-I alpha activation

The intersection of NFkappaB and fibroblast growth factor receptor signaling pathways	cAMP-induced allosteric switch in PKA

Insights into the homeostatic regulation of I kappa B alpha	Structural characterization of viral capsid maturation in bacteriophage HK97

RhoA, B, and C in cancer: Study of statin-induced changes in Rho signaling, and identification of isoform-specific Rho effectors	Distinct functions of negative regulators of NF-kappaB

Deciphering proteolytic signaling	Mechanisms that regulate the maturation and down-regulation of protein kinase C

Organic synthesis as an effective approach to chemical, pharmaceutical, and biosynthetic investigations of natural products	Biosynthesis of scytonemin, a cyanobacterial sunscreen

Spatiotemporal regulation of protein kinase C signaling: Control of normal cellular dynamics and mis-regulation in cancer	Directional phosphorylation and dephosphorylation of the SR protein ASF/SF2

Small molecule interactions with heparan sulfate	Cancer, cell fate, and transcription: Regulation of the p53 transcriptional response by structurally diverse core promoters

Kinetics of codon recognition on the ribosome by tRNAs and release factors	Methods and devices for fabricating and assembling DNA and protein arrays for high-throughput analyses

Throwing a wrench in the translational machinery: Discovery of RNA ligands by fluorescence techniques	Crosslinking studies in natural products biosynthesis

Structural studies of bacteriophage Hong Kong 97 prohead I and development of nano-particle applications	Think positively: The structural basis of cation-binding and coupling of the multidrug and toxic-compound extrusion (MATE) transporter family

Synthesis and applications of quinazoline-based fluorescent nucleoside analogues	Biosynthesis and engineering of cyclomarin and cyclomarazine: Prenylated, non-ribosomal cyclic peptides of marine actinobacterial origin

Spatial and Temporal Dynamics of Marine Natural Products Biosynthesis	Posttranslational Regulation of Caveolin by Small- Ubiquitin-like Modifier (SUMO) Proteins

Metal-Directed Protein Self-Assembly	Inter- and Intracellular Dynamics of DNA Methylation

The regulation of global deSUMOylation by human SUMO-specific proteases	The Genetic Basis for Adaptation of Escherichia coli to Growth in Minimal Media

Boundary lubrication of articular cartilage: Contribution of hyaluronan in health and injury	The Importance of Metal Binding in Metalloprotein Inhibitors

Xenotransplantation of Mitochondrial Electron Transfer Enzyme, Ndi1, Treats Myocardial Reperfusion Injury	Expanding the Utility of Proteins as Platforms for Coordination Chemistry

The non-canonical NFkappaB pathway modulates inflammatory signaling by the canonical NFkappaB pathway	Exploring Guanidinoglycoside Molecular Transporters

Nanoscale Sensing Methodology Via Functional Control of an Ion Channel-Forming Peptide, Gramicidin A	Development of tools for the preparation of genomic libraries for next-generation sequencing

Novel Biodiversity of Natural Products-producing Tropical Marine Cyanobacteria	Biosynthetic Investigations of Ansamycin Natural Products from Marine-Derived Actinomycetes

Targeting the brain: Identifying and inhibiting harmful protein-amyloid interactions in Alzheimer's disease	Towards an understanding of human alpha-7 nicotinic acetylcholine receptor selectivity: the creation and characterization of a soluble ligand binding domain template

Post-translational modifications in intrinsically disordered regions and their contribution to protein-protein interactions	Structural and Functional Study of Virus Protein 'u' from HIV-1 by Nuclear Magnetic Resonance Spectroscopy

The Chemistry and Biology of Zoanthamine Alkaloids and Illicium Sesquiterpenes	Structural and functional studies of the Drosophila melanogaster snRNA activating protein complex (DmSNAPc)

Fluorescence-based Investigations of the Dynamics and Properties of Cell Penetrating Peptide Cellular Uptake Mechanisms	Causation in Biology: A Biomolecular Systems View

In vivo selection and in vivo evolution of a trans-splicing ribozyme	Development and Application of All-Atom Structure-based Models for Studying the Role of Geometry in Biomolecular Folding and Function

Biodegradable Porous Silicon Nanomaterials for Imaging and Treatment of Cancer	Enhanced Sampling Development for Accessing Long Time Scale Protein Dynamics

Light-Driven Uncoupling of Nitrogenase Catalysis from ATP Hydrolysis	Investigating the Role of Turn Motif and Activation Loop Phosphorylation in the Regulation of PKA Structure and Function

Computational Studies in Diffusion and Drug Discovery	The Intricacies of UGT Regulation: Protein-Protein Interactions and Environmental Arsenic Exposure

Uncovering Allostery in a Uniquely Folded Metalloprotein