ProQuest Subject Index - Biochemistry at UNIVERSITY OF CALIFORNIA BERKELEY

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You are viewing titles for UNIVERSITY OF CALIFORNIA BERKELEY in the Biochemistry available through the UMI Dissertations & Thesis Gradwoorks site

Programmable cell adhesion encoded by DNA hybridization	Site-selective bioconjugations for the development of biomolecular devices

Stability and interface organization of a large homodimeric enzyme, and engineering of allosteric communication between its two active sites	Calculation of the relative stabilities of proteins as a function of temperature, pressure, and chemical potentials in subcellular and geochemical environments

Structures and mechanisms of bacterial sigma54-dependent transcription initiation	Viral modulation of the immune system

Single-molecule mechanical folding reactions of RNA pseudoknots	Analysis of overlapping transcripts in the RAG locus: Implications for mammalian gene regulation

Applications of transcriptional profiling in the engineering of Escherichia coli for the production of anti-malarial therapeutics	Electrospray ionization mass spectrometric investigation of the barnase/barstar interaction

Conformational dynamics and activation of the P21 activated kinase	Advances in the synthesis of DNA-binding polyamide ligands, their biophysical characterization, and effects on bacterial sporulation

In vivo role of TAF4 in TFIID structural integrity and co-activator function	Small noncoding RNAs and their biogenesis in Tetrahymena thermophila

Single molecule studies of a viral DNA packaging motor	Structural basis for mRNA and tRNA positioning on the ribosome

N-terminal processing of proteins exported by malaria parasites	Switching core promoter recognition complexes during myogenic differentiation

A novel class of in silico devices to study drug transport through intestinal barriers	Techniques for the incorporation of biomolecules into nanoscale devices

Structure, function, and regulation of eukaryotic-like Serine/Threonine protein kinases in Mycobacterium tuberculosis	Development of chemical approaches to study O-GlcNAc glycosylation

The reaction of 1-aminocyclopropane-1-carboxylate synthase with a substrate analog, Se-adenosyl-L-selenomethionine	The contribution of sulfated metabolites to mycobacterial pathogenesis

Single molecule RNA folding studied with optical trapping	Effect of methyl group deficiency on the methylene-tetrahydrofolate reductase, methionine synthase and euchromatic histone methyltransferase 1 mouse models

Characterization and engineering of a thermophilic chaperone to improve enzyme stability in denaturing co-solvents	Single particle structural analysis of the Drosophila melanogaster Origin Recognition Complex

Chemical approaches towards capturing and imaging a topoisomerase-DNA complex	Investigating the heme environment and mechanism of activation of soluble guanylate cyclase

Proteolysis of immobilized proteins at the solid/aqueous interface: Implications for detergency	Deconstructing protein/protein signaling using supported lipid bilayers

Chemical approaches to imaging glycans in living animals	Structural and functional characterization of the regulation of PknB, and essential serine/threonine protein kinase of Mycobacterium tuberculosis

Auto-activation mechanism of a mycobacterial Ser/Thr protein kinase	Linking protein dynamics to protein function

Cryptic translation in immune surveillance under stress	Investigation into a novel two component signaling pathway in Shewanella oneidensis MR-1

Structural studies of the interaction of ribosome recycling factor with the ribosome	ATF6 transport from the endoplasmic reticulum to the Golgi during the unfolded protein response

An investigation of inorganic scaffolds for studying new techniques and applications in membrane stabilization	In vitro studies of the hepatitis C virus (HCV) RNA dependent RNA polymerase NS5B: The impact of the NS5A protein on replication

Development of a biomimetic transamination reaction for the N-terminal labeling of proteins and peptides	Physiological characterization of the interaction between retinoid homeostasis and energy metabolism

Roles for combgap and GAGA-factor in long-range enhancement of the Drosophila melanogaster gene Sex combs reduced	Controlling RNA polymerase II transcriptional elongation through positive and negative regulation of P-TEFb

Investigation of general metabolism in the metal reducer, Shewanella oneidensis MR-1	Self-assembling light harvesting systems templated by the tobacco mosaic virus coat protein

Design of biosensors incorporating 2-D arrays of microspheres	Investigation of substrate specificity in copper amine oxidases from Hansenula polymorpha

Allosteric control of the ZAP-70 tyrosine kinase	Structural studies of a selective nitric oxide sensor

Membrane-dependent control of the Ras activator Son of Sevenless	Bridging the gap between protein structure and dynamics: Single-molecule studies of protein conformational dynamics

Part A: Structural studies of bacterial methyl-accepting chemotaxis proteins. Part B: Water polygons in protein crystals	Spatial organization in the immune synapse

Mechanism of oxygen activation and coupling to C-H cleavage in taurine alpha-ketoglutarate dioxygenase (TauD) and active-site mutants	Structural and biochemical analysis of sliding clamps in DNA replication and DNA damage checkpoints

Sulfatases and the formylglycine generating enzyme applications in protein engineering	Quantitative study of microphage cellular proteome and phagosomal membrane proteome in response to mycobacterial lipids

The chemistry of the heme domain of nitric oxide synthase: Toward a detailed mechanism of NG-hydroxy-L-arginine oxidation	Modes of hydrogen production in the photosynthetic bacterium, Rhodospirillum rubrum

An ER-dependent lipid droplet formation model---A subcellular localization study of multiple proteins involved in lipid droplet biogenesis, and, Lipid droplet association of RDH10 and its functional study	Protein folding and evolution with lattice models

Structural specialization of bacterial type IIA topoisomerases	Enhancing the catalytic activity of solubilized enzymes in organic solvents

Structural and biochemical characterization of the P-element transposase of Drosophila melanogaster	In vitro biochemical studies of NS5B, the HCV RNA dependent RNA polymerase

Diterpene production in Mycobacterium tuberculosis	Structure and regulatory mechanism of sigma54 activator proteins

Development of copper-free click chemistry and application to imaging glycans in living systems	Structural studies of calcium/calmodulin dependent protein kinase II activation

Studies of intracellular and extracellular functions of apolipoprotein A-V on triglyceride metabolism	Probing the heme structure and environment of bacterial Heme-Nitric oxide/OXygen binding domains with resonance Raman spectroscopy

Beyond the native state: Exploring the role of partially folded conformations on the protein energy landscape	The Evolution of a Transcription Factor: Divergence in DNA Binding Behavior of the Sex-Determination Gene hermaphrodite in the Genus Drosophila

Analysis of Two Widespread Versions of a Bacterial Replicative DNA Polymerase	Molecular Imaging Approaches to Understanding the Roles of Hydrogen Peroxide Biology in Stress and Development

On the Molecular Mechanisms of Functional and Dysfunction NO Signaling in Mammalian Physiology	New tools for chemically directed proteomics

Investigation of the structure and mechanism of a PQQ biosynthetic pathway component, PqqC, and a bioinformatics analysis of potential PQQ producing organisms	From virology to cell biology, understanding unconventional ubiquitination

Translational Control in Fungi	Molecular Imaging Approaches to Understanding the Roles of Copper in Biology

Transpulmonary Lactate and Pyruvate Kinetics	Identification and Characterization of the Drosophila Inverted Repeat Binding Complex

New Tools and Approaches for Studying the Role of the Saccharomyces cerevisiae phosphatidylinositol 4-kinase Pik1 in the Yeast Nucleus	Function and Signaling Specificity of the Hog1 Mitogen-Activated Protein Kinase in the Yeast Saccharomyces cerevisiae

Introns and alternative splicing in choanoflagellates	Engineering a responsive, heterologous mevalonate pathway in Escherichia coli using microarrays

Naturally Occurring Melanin Synthesis Regulators and Their Modes of Action	Oriented Attachment of Cytochrome P450 2C9 to a Self-Assembled Monolayer on a Gold Electrode as a Biosensor Design

Odorant Detection by Biological Chemosensor Arrays	Determining the Role of the Mycobacterium tuberculosis Serine/Threonine Protein Kinase, PknH, in Cell Signaling

The Role of Angiopoietin-like 4 in Lipid Homeostasis	Investigation into the biosynthesis and function of a novel sulfomenaquinone from Mycobacterium tuberculosis

Biophysical Mass Spectrometry Techniques for Probing the Higher-Order Structure of Proteins and Complexes	Septin Self-Assembly: Plasticity and Protein Scaffolding

Function and regulation of the Super Elongation Complexes in HIV-1 transcription	Organic and Printed Electronics for Biological Microfluidic Applications

Molecular Mechanisms of Anthrax Toxin Assembly and Transport	Mechanistic insights into the roles of P-TEFb and its novel cofactors in tumorigenesis and HIV transcription

Novel Analytical Methods for Examining Biomolecular Complexes Using Electrospray Ionization Mass Spectrometry	Investigations of Metabolic Pathways in Mycobacterium tuberculosis

Nuclear Magnetic Resonance and Biochemical Investigations of Environmental Changes on Structure and Function of Subtilisins	New Tools for Chemically Directed Glycoproteomics and 129Xe-based MRI Contrast Agents

Statistical algorithms in the study of mammalian DNA methylation	Genome-Free Viral Capsids for Targeted Drug Delivery to Breast Cancer