Modulation of C. elegans transcription factor activity by HIM-8 and the related zinc finger ZIM proteins
by Sun, Hongliu, Ph.D., THE PENNSYLVANIA STATE UNIVERSITY, 2008, 136 pages; 3431485

Abstract:

The C. elegans him-8 gene encodes a C2H2 zinc finger protein that binds to the pairing center of the X chromosome to mediate its synapsis and pairing in meiosis. HIM-8 belongs to a zinc finger protein family which also includes ZIM-1, ZIM-2 and ZIM-3. These ZIM proteins have analogous functions to HIM-8 in promoting pairing of specific autosomes in meiosis. Our lab recently has reported a novel role of HIM-8 in negatively regulating the Sox domain transcription factor EGL-13 encoded on the X chromosome. Mutation of him-8 suppresses the egg-laying and underlying vulval morphology defects of the egl-13 mutant with mutations in the Sox DNA binding domain. My data show that all ZIM proteins function similarly to HIM-8 in suppressing EGL-13 transcription factor. In addition, mutation of him-8 suppresses phenotypes caused by missense mutations in the DNA binding domain of other transcription factors, including the zinc finger protein SPTF-3, the PAX protein EGL-38, and the HOX protein LIN-39. Mutation of him-8 has no effect on null alleles of above transcription factors and non-null alleles of non-transcription factors including LIN-15, SUR-6, EGL-26 and UNC-37. These results suggest that HIM-8 and the related ZIM proteins have a broad ability in suppressing transcription factors encoded on multiple chromosomes; that the HIM-8/ZIMs suppression is specific to transcription factors with compromised DNA binding activity; and that the effects caused by HIM-8/ZIMs are global that occur in multiple tissues in the soma.

I further investigated the mechanism by which HIM-8/ZIMs suppresses the activities of the transcription factors. My data demonstrated that him-8 mutations increase the transcription of the targets of two transcription factors and that him-8 and zim-1 mutations result in increased H3K4 methylation level, indicating that the transcription level is increased and that the chromatin is modified to a more accessible status in him-8/zim-1 mutant. It is possible that him-8/zim-1 increases transcription level by mediating chromatin modification. dpy-30 RNAi did not clarify the role of DPY-30 in HIM-8 suppression, but it suggests that RNAi might be an additional mechanism of HIM-8 suppression.

 
AdviserZhi-Chun Lai
SchoolTHE PENNSYLVANIA STATE UNIVERSITY
SourceDAI/B 71-12, p. , Dec 2010
Source TypeDissertation
SubjectsMolecular biology; Genetics
Publication Number3431485
Adobe PDF Access the complete dissertation:
 

» Find an electronic copy at your library.
  Use the link below to access a full citation record of this graduate work:
  http://gateway.proquest.com/openurl%3furl_ver=Z39.88-2004%26res_dat=xri:pqdiss%26rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation%26rft_dat=xri:pqdiss:3431485
  If your library subscribes to the ProQuest Dissertations & Theses (PQDT) database, you may be entitled to a free electronic version of this graduate work. If not, you will have the option to purchase one, and access a 24 page preview for free (if available).

About ProQuest Dissertations & Theses
With over 2.3 million records, the ProQuest Dissertations & Theses (PQDT) database is the most comprehensive collection of dissertations and theses in the world. It is the database of record for graduate research.

The database includes citations of graduate works ranging from the first U.S. dissertation, accepted in 1861, to those accepted as recently as last semester. Of the 2.3 million graduate works included in the database, ProQuest offers more than 1.9 million in full text formats. Of those, over 860,000 are available in PDF format. More than 60,000 dissertations and theses are added to the database each year.

If you have questions, please feel free to visit the ProQuest Web site - http://www.proquest.com - or call ProQuest Hotline Customer Support at 1-800-521-3042.