Enzyme on ice: Kinetic and EPR spectroscopic characterization of the CoII-substrate radical decay reaction in coenzyme B12-dependent ethanolamine ammonia-lyase
by Zhu, Chen, Ph.D., EMORY UNIVERSITY, 2010, 157 pages; 3423140

Abstract:

The transient decay reaction kinetics of 1,1,2,2- 1H4- and 1,1,2,2-2H4-aminoethanol-generated CoII-substrate radical pair catalytic intermediate in ethanolamine ammonia-lyase (EAL) have been measured by using time-resolved, X-band continuous-wave electron paramagnetic resonance (EPR) spectroscopy in frozen aqueous solution from 190 to 223 K. The decay is biexponential at temperature T<214 K (1H) or <210 K (2H), with fast and slow phase first-order rate constants kobs,f and kobs,s, respectively. The decay becomes monoexponential at temperature T≥214 K, with rate constant k obs,m. The kobs,f and kobs,m values adhere to the same linear relation on a lnk versus T-1 (Arrhenius) plot, and therefore represent the same mechanism, which is proposed to be the native forward reaction of the substrate radical through the radical rearrangement step. The 1H/2H isotope effect (IE) on kobs,f of 1.4±0.1 at 190≤T≤207 K is assigned to an α-secondary hydrogen kinetic IE on the rearrangement step. The kobs,s values obey a different Arrhenius relation, and display an inverse kinetic IE (0.8±0.1). The slow decay phase is proposed to be associated with the forward reaction, but with a different rate determining step. The 1H/2H IE on kobs,m increases continuously at T>210 K, to 2.1±0.1 at 223 K. A three-state (substrate radical, product radical, diamagnetic products), two-step [rearrangement, and subsequent hydrogen atom transfer, (HT)] model is used to generate a consistent fit to the temperature dependence of the kobs,f, kobs,m values and IEs at low temperature with kcat values and IEs at 277 K (IE=5.5) and 293 K (IE=7.8). The model shows that the four decade-old paradox of 1H/2H and 1H/3H IEs in EAL, and the temperature dependent IE, are caused by a significant negative activation entropy for the HT step, relative to rearrangement. The bifurcation of the decay kinetics at 207 HT step, relative to rearrangement. The bifurcation of the decay kinetics at 207< T<214 K is addressed by measuring the detailed (1 K intervals) temperature dependence of samples prepared with only slow phase population. The steep lnk versus T-1 dependence is discontinuous with the fast and slow phase relations. The origin of the kinetic bifurcation is proposed to arise from a protein dynamical transition, which is coupled to the core adiabatic reaction in EAL.

 
AdviserKurt Warncke
SchoolEMORY UNIVERSITY
SourceDAI/B 71-11, p. , Oct 2010
Source TypeDissertation
SubjectsMolecular physics; Biophysics
Publication Number3423140
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