Irreversible photooxidation of DNA and mononucleotides in water
by Wosinska, Zofia M., Ph.D., ARIZONA STATE UNIVERSITY, 2009, 206 pages; 3351522

Abstract:

Oxidative damage to DNA is implicated in mutation, premature aging and disease. At the molecular level, the primary process is one-electron oxidation of one of the nucleobases to form a radical cation. Despite the fundamental importance of the nucleobase radical cations, most of what is known about their production and reactions in duplex DNA has come from indirect experimentation. Specifically, direct spectroscopic studies have proved difficult due to small signal sizes, interfering absorptions from reaction initiators, and low time-resolution in existing methodology. This thesis describes a novel approach to the study of the radical cations of the DNA nucleobases. Several novel photochemical sensitizers have been developed that allow these species to be formed with high efficiency, with high time-resolution, and with minimal interference in spectroscopic experiments. This approach has allowed the reactions and properties of the nucleobase radical cations to be studied both in buffered water and in duplex DNA. The kinetics of electron and proton transfer reactions of the purine radical cations are described for the first time. The thermodynamics of these electron and proton transfer reactions have also been determined using novel kinetic methods. Studies in duplex DNA have shown that rapid deprotonation of the guanine radical cation occurs, shifting the location of the positive charge from guanine to cytosine, which has significant implications for the mechanisms of long-range charge transport and formation of DNA oxidation products. Experiments in DNA with multiple G sequences suggest that deprotonation can be inhibited due to charge delocalization. Experiments in DNA with adenines and thyrnines allow observation of both purine and pyrimidine oxidation intermediates. Spectroscopic evidence for formation of delocalized radical cations is obtained for DNA containing multiple A sequences. These experiments represent the first direct spectroscopic studies of DNA oxidation.

 
Advisor
SchoolARIZONA STATE UNIVERSITY
SourceDAI/B 70-03, p. , May 2009
Source TypeDissertation
SubjectsOrganic chemistry
Publication Number3351522
Adobe PDF Access the complete dissertation:
 

» Find an electronic copy at your library.
  Use the link below to access a full citation record of this graduate work:
  http://gateway.proquest.com/openurl%3furl_ver=Z39.88-2004%26res_dat=xri:pqdiss%26rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation%26rft_dat=xri:pqdiss:3351522
  If your library subscribes to the ProQuest Dissertations & Theses (PQDT) database, you may be entitled to a free electronic version of this graduate work. If not, you will have the option to purchase one, and access a 24 page preview for free (if available).

About ProQuest Dissertations & Theses
With over 2.3 million records, the ProQuest Dissertations & Theses (PQDT) database is the most comprehensive collection of dissertations and theses in the world. It is the database of record for graduate research.

The database includes citations of graduate works ranging from the first U.S. dissertation, accepted in 1861, to those accepted as recently as last semester. Of the 2.3 million graduate works included in the database, ProQuest offers more than 1.9 million in full text formats. Of those, over 860,000 are available in PDF format. More than 60,000 dissertations and theses are added to the database each year.

If you have questions, please feel free to visit the ProQuest Web site - http://www.proquest.com - or call ProQuest Hotline Customer Support at 1-800-521-3042.