An elasticity theory for relatively short DNA molecules
by Li, Jinyu, M.S., UNIVERSITY OF COLORADO AT BOULDER, 2007, 40 pages; 1447689

Abstract:

Single-molecule experiments in which force is applied to DNA or RNA molecules have enabled important discoveries of nucleic acid properties and nucleic acid-enzyme interactions. These experiments rely on a model of the polymer force-extension behavior to calibrate the experiments; typically the experiments use the worm-like chain (WLC) theory for double-stranded DNA and RNA. This theory agrees well with experiments for long molecules. Recent single-molecule experiments have used shorter molecules, with contour lengths in the range of 1-10 persistence lengths. Most WLC theory calculations to date have assumed infinite molecule lengths, and do not agree well with experiments on shorter chains. We describe the finite worm-like chain (FWLC) theory, which takes into account (i) boundary conditions at both ends of the molecule and (ii) bead rotational fluctuations. We show that the FWLC theory predictions differ from the classic WLC solution for molecules with contour lengths a few times the persistence length. Thus the FWLC theory will allow more accurate experimental calibration for relatively short molecules, facilitating future discoveries in single-molecule microscopy.

 
AdvisersMeredith D. Betterton; Keith Julien
SchoolUNIVERSITY OF COLORADO AT BOULDER
SourceMAI/ 46-03, p. , Feb 2008
Source TypeThesis
SubjectsMolecular physics; Condensed matter physics; Biophysics
Publication Number1447689
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